Scaffold SI39nov09_135mDRAFT

Basic Information
Taxon OID	3300000153 Open in IMG/M
Scaffold ID	SI39nov09_135mDRAFT_c1007830 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 135m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000153 Open in IMG/M

Scaffold ID

SI39nov09_135mDRAFT_c1007830 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 135m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	2756
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2756

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet 39, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.35	Long. (^o)	-123.29	Alt. (m)	Depth (m)	135
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet 39, Vancouver Island, BC, Canada

Coordinates

Lat. (^o)

48.35

Long. (^o)

-123.29

Alt. (m)

Depth (m)

135

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F081198	Metagenome / Metatranscriptome	114	N
F085538	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
SI39nov09_135mDRAFT_10078302	F085538	N/A	LTSEHIFKVGVGINYFDDTKGLIKILTNDTVYDYITKFYVIDGLYAGRNDKQKSDPTYLKDLKDIYSKIHIVDMNNKTQIQKRNKYWELAKKDKMDYMIVCDSDEYMDIKPDILDNSLRTIQDRPEKCYPIKQHMVGITTMSRPRLFKGPYTFRHLQNEKENIISHGSLYDKDDTEIINQMYAWFKDHPKREINSDNQSGIDGIEMWHNKEFRTKERIIADRVYYDNTPNR*
SI39nov09_135mDRAFT_10078303	F037175	GGA	LLNLKVNNIGRWIEKWDIHVWDLKDTNPQFFEHVKTTSGQKINTSMPSGVTGKFRMDLYLHDSSNVFKARENSDRIMHETCHAILIGTPHFVSGVHDNINNRFQATXWYWDRFKYTKFTLSIIDIRAYL*
SI39nov09_135mDRAFT_10078306	F081198	N/A	TEEQGQAFMDKLFETGYNKLVLEKEGWIESHSFQKQTGNGEVQEAVSTSGTVPGVKQSSNISIQLGSKTAIPIRQYGQFQAVPTGQNTARFYRITVPDAGAITESPTTDITAVTHTLTAIDVTCNIRGWRQVVEKANLEDYPASFLNAIRETARLEAIRDEHKLILQDLGALDHDFGGVTTAPYHIGGSDGAATSNPTEEDADGELDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFESLISSTSLSEYTQIGNAGITRLGQMERLYGIDIIVTNELLSANNASRNLVCVKGKCWGLASQRKMEIEFQKNIAGQYWDIVWTHRVGVDILDPNTYVIVSTVNA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold SI39nov09_135mDRAFT_c1007830

Overview

Ecosystem & Geography

Associated Families

Sequences