Scaffold LPjun08P12500mDRAFT_c1023244

Overview

Basic Information

• Taxon OID: 3300000152
• Scaffold ID: LPjun08P12500mDRAFT_c1023244
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 975
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P12, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.97
  • Long. (^o): -130.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F049706	Metagenome / Metatranscriptome	146	Y
F067095	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun08P12500mDRAFT_10232441	F067095	N/A	KYEKISDKFVRGCMKLLNIPIRTTYYNFLGKVLVFWGDMFCKYSLDLETNGWMKSSLLLWSIGVWFYDASNKYAWIHIIDSRKYSTNPTRKYNE*
LPjun08P12500mDRAFT_10232442	F005103	N/A	MSEESVQIFINKKEMPYSHQNMARTINSFLPYLTNDDLTELGQDILDLMNHREKKEAISRLEVKQHSWPYPDTINRDEI*
LPjun08P12500mDRAFT_10232443	F049706	N/A	MKFEKDHPYMIRLDEVLKQFFVVKVDDANGAEHGEDYEEMKQVILDSLFTSYLGETIRK*