Scaffold LPjun08P12500mDRAFT_c1013189

Overview

Basic Information

• Taxon OID: 3300000152
• Scaffold ID: LPjun08P12500mDRAFT_c1013189
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1432
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P12, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.97
  • Long. (^o): -130.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051977	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun08P12500mDRAFT_10131892	F001235	GAG	VATKLNVDPGSDIGKKLWDRHQANEYTHVNNYKEAICINCFTKDATSATIADICGECAGKRGREPLLATITQKMYGLCFFCGKYQFNIEQINARFCRGCHRKIANVTKEYNKKGGPLGMDPFWIAMRKKHGKDWKVIMKDNLGNKR*
LPjun08P12500mDRAFT_10131895	F051977	N/A	YVYETEKEYLKIYNRMDKEVMFSAPILDIFLKPDKKLWVVSKVTKNKERPQLGRSIVNFVNGTVFEYSNGDERPILKNSVVFNPKKGRVEFFPKKLREAELWIRVDRFYGIPPKGKVVLDQSKRFYDVSRDRINFIVKNKDGI*