Scaffold LPjun08P12500mDRAFT_c1002302

Overview

Basic Information

• Taxon OID: 3300000152
• Scaffold ID: LPjun08P12500mDRAFT_c1002302
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3952
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P12, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.97
  • Long. (^o): -130.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051207	Metagenome / Metatranscriptome	144	Y
F084353	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
LPjun08P12500mDRAFT_10023023	F001235	GAG	MATKLNVDTGGQDIGKKLWNKHQEDEYTHVNHYKEAICINCFKKDAAAATIVDICGDCAGKRGREPLLAKVTDKMYGLCFFCGKHKFHIEQINARFCHKCHRKIADVTKKYNKKGGMFGADPFWIRMRKKHGKDWKHMFQANSGNRR*
LPjun08P12500mDRAFT_10023024	F084353	N/A	MDWKRKKTVIPRCDCSIHDIASGIVEYLIITPIFALGYLLITIPWMLFVIGLDTEQFGNFVWQSVMVDLVVAYPLAKLVMRLKPRIEKIAKLGH*
LPjun08P12500mDRAFT_10023026	F051207	N/A	MASSIYIYTNKKDYDNLYKGKREAWTYETPILDFFIKPTEGYDVVDSILTNRLWVVTNTTKNKERPDLSRTIVHFTNGTAFDHLRGDELLVEKEKIIYNPKNNQLEFYPRRLRQPLLSLRVAKVVGGRPDKKSKIDIKYKYYDLTHDRLNLFV*