Basic Information | |
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Taxon OID | 3300000151 Open in IMG/M |
Scaffold ID | SI53jan11_200mDRAFT_c1009663 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 200m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2510 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet 53, Vancouver Island, BC, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | 200 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F062497 | Metagenome | 130 | N |
F080488 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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SI53jan11_200mDRAFT_10096633 | F080488 | AGG | MEYKEWYSVGVEKGYLRKYTTRLVDGLASNIKMFQKAFTPSVKDKIGKSTTDTMEKYGHQLYWLMIQRDMMDSEKYWEETDV* |
SI53jan11_200mDRAFT_10096634 | F062497 | N/A | MELFNISVVDFYWRAFLLETKIGNRDGWRRFMIKMKELLSLTEDVDKDIKRNIDELGQLDREIDELQKQLKPLRQKYGELVDNVLPMLNKLGKEQVRTKNYIFKIIRKGYERQSFQYKEGFNRALDKVNTNVKRILEQVLDDTKKMVKVSANFQVKPIEIKESSFTDWIKKYTRKVVMKIIPYMKIIVKTNNDLRKMI* |
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