Scaffold SI48aug10_120mDRAFT_c1001694

Overview

Basic Information

• Taxon OID: 3300000150
• Scaffold ID: SI48aug10_120mDRAFT_c1001694
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6427
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 48, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066454	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
SI48aug10_120mDRAFT_10016947	F066454	AGGA	MSIRLDVLILINSGVTDRSEIVERLGINIRSVSNCVRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKALTVDDYRKSPQRKIPAYEVMRSHLGVGGDVTRSELVNLWNELTDYYLPYEGDKEFTEIVVFPP*