Scaffold LPaug09P1610mDRAFT_c1008695

Overview

Basic Information

• Taxon OID: 3300000149
• Scaffold ID: LPaug09P1610mDRAFT_c1008695
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1410
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F007551	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_10086952	F007551	AGGA	MQTWEEMMITKILTQAVEDAKYTGLSKFDLEHKIESINWIMSGDPQFKYYCKLLNIEPSYIQNKIKRCAETRITNQQKTILKPIVEKLLKSKKYEKNWFKLNVDESIQLTQQEVKQ*
LPaug09P1610mDRAFT_10086954	F003514	AGGAG	MITPQEYNKLRQEELILNAAKSGGAVKSEMLHGSLFVTFTSGFVDVLSQNLKYVLEKLLDNTTVKMYNTTNNEYAYDFI*
LPaug09P1610mDRAFT_10086955	F004191	AGGAG	MLKFKEIMATLFAVLGIILIVGTVGAVETDQYILALTLFVIGTSTMFLSIICQEK*