Scaffold LPaug09P1610mDRAFT_c1006265

Overview

Basic Information

• Taxon OID: 3300000149
• Scaffold ID: LPaug09P1610mDRAFT_c1006265
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1740
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014744	Metagenome / Metatranscriptome	260	Y
F028861	Metagenome	190	Y
F105930	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_10062652	F028861	GGAGG	MADRIIYRLWEYDSSTGDEKIWYSHVRKNLENQFPTISEDQHITEIKFDANDMESLCDKLNNDELEEE*
LPaug09P1610mDRAFT_10062655	F014744	AGGAG	MYNSLTNILNYKLSALHSGNYLIKVISIGVRRPNEHYTKEYFVSVKYQVADLLNPKRKFGVIVSGMGAKPIELNVERELHPTNYFTWENFDEVLFNRLSKTQKEINEEGYYKKDRDTGRVVA*
LPaug09P1610mDRAFT_10062657	F105930	GAGG	MNKKYKVIIPEMEFNVEAEDENDAEYQTIGLFDWGNVDMEIEEEL*