Basic Information | |
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Taxon OID | 3300000149 Open in IMG/M |
Scaffold ID | LPaug09P1610mDRAFT_c1006017 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1787 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | P16, Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.283333 | Long. (o) | -134.666667 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003769 | Metagenome / Metatranscriptome | 469 | Y |
F011629 | Metagenome / Metatranscriptome | 289 | N |
F087017 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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LPaug09P1610mDRAFT_10060172 | F087017 | AGG | MLKITNTTIEKDGTFGTNTNYTVEGTVELAMDSIWDYDGKNVVAVENIQVYEHTDSEMGQYDVNVTHNADWNIYTDSGFETAISNLLGVEVQFTEQGMQDDGYASMET* |
LPaug09P1610mDRAFT_10060174 | F011629 | GAGG | MLDTTQVKKLVSTRFGGSLKNVYLNKCYSNNTEIANKRNMAFTVDADNFANVDFVALAKEIGCKRVKLYKAFLRGFENGCYLRLVQVHYNK* |
LPaug09P1610mDRAFT_10060175 | F003769 | AGGA | MQQIKTINVKTSNKVESVHMETLYNVIENCYNKLQLLDADCTGASYFISSANIFAQLQTLYAENESNNYVALSSIMEIFGNNITFYDEKYSLFESVVENTAMQNVNIENFMYLCN* |
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