Scaffold LPaug09P1610mDRAFT_c1005778

Overview

Basic Information

• Taxon OID: 3300000149
• Scaffold ID: LPaug09P1610mDRAFT_c1005778
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1836
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023955	Metagenome	208	Y
F087892	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_10057784	F087892	N/A	MRKYDEEEVVSIMSEIEWRDQQIRELEEWIHLQKIQQQEKHKPKNWVRIITWSFIITIASGLPVFAYGRNAWQMTAYYINKALWETKEWWY*
LPaug09P1610mDRAFT_10057788	F023955	AGGA	MKVIHNIMLVRDNGDIEYHDVEGEWNEEGSGGPSFKPLYKLLDCKLIEIAYGMGDMTKELPMFLDEEGLYNDTNVINEIATNMQKKWCDANQRMQISPIVGDVAVDLGLCNESLSIVSHYLEGDEHDRENYPAQT*