Scaffold LPaug09P1610mDRAFT_c1003411

Overview

Basic Information

• Taxon OID: 3300000149
• Scaffold ID: LPaug09P1610mDRAFT_c1003411
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2483
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016897	Metagenome	244	Y
F019389	Metagenome	230	Y
F059444	Metagenome	134	N
F087744	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_10034112	F016897	N/A	MVNNRIINKQLSKRELSKILFDTLKKENGLAIRMIVRDYNNKQMENKNVKQIRDMATNSSI*
LPaug09P1610mDRAFT_10034114	F059444	N/A	MTKRNXXIQQQIYDIESQYPNLHIDLHRDQFKSGDVDKLHLLYNQLEEVKKYGDVNQGLGTWNGYEYINNK*
LPaug09P1610mDRAFT_10034117	F087744	N/A	MKKNILVTFDMQVGDYEHSDKYIFYNKTSDYKYCKQFWSLKKKNKLDEGVYWDNQGLNAISVYSTQEITEQETKTLKRLGIA*
LPaug09P1610mDRAFT_10034118	F019389	GAGG	MNWKDDFIKFVNKLSKKRGWKCDDLNPYFYQIDLLHLSNAKTLREYKQQQKQKASK*