Scaffold LPaug09P1610mDRAFT_c1000779

Overview

Basic Information

• Taxon OID: 3300000149
• Scaffold ID: LPaug09P1610mDRAFT_c1000779
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5651
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F031261	Metagenome	183	Y
F051470	Metagenome	144	N
F068823	Metagenome	124	N
F071663	Metagenome	122	N
F094102	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_100077910	F031261	GGAGG	MNRTRTYVMSVEKNSPEVLEQLNKLQEVRQGVRLLNRHSRRKHYVKCQGRWGRNNPDYNQRMIPFCPLDKAVKWDVYIYEK*
LPaug09P1610mDRAFT_100077911	F068823	AGGAGG	MSRTYNEYYFEKEDVEATLDKIGLLTRLLGIVYKEQGLDTIKYLVERNSNRKYNWLDDEMMTDIINTLEDKEYE*
LPaug09P1610mDRAFT_100077913	F051470	AGGAGG	VSNDNKWVHDYYDERHEHYIKVLSVDIKDVELVEAMADRMAMEDVENLEMEG*
LPaug09P1610mDRAFT_100077915	F071663	AGGAG	MIDNLIEEIIAEIKRDIHTNNLFTLRETLGTLLKDKDNKYILTNYLSEFPELREEYKEVKDNDKD*
LPaug09P1610mDRAFT_10007792	F094102	GAG	MKDTVLTPMNKEEYRVWENYVIKYNEDNPTNQIAYEVNWKDNIYKVKLLSLKIDNEGQE*
LPaug09P1610mDRAFT_10007797	F010532	GAGG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWEKPTDVSDVDVIHRIEEHLSYMVSSYLNKSYEGISVD*
LPaug09P1610mDRAFT_10007799	F010318	GAG	MNVDSDKPRYLECIYEAPITFDLEELGIDWDKVKDYHVKWGTLYVEFKDGTSEQHEGSQGETDWKWSAKENILTEGWSLVEGLN*