Basic Information | |
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Taxon OID | 3300000149 Open in IMG/M |
Scaffold ID | LPaug09P1610mDRAFT_c1000411 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7931 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (80.95%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | P16, Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.283333 | Long. (o) | -134.666667 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030567 | Metagenome / Metatranscriptome | 185 | N |
F047364 | Metagenome | 150 | N |
Protein ID | Family | RBS | Sequence |
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LPaug09P1610mDRAFT_100041117 | F030567 | AGG | MISKAKQEHIISSITDGHSLVKACADAKVSRATLYRYMSKDADLDSNVKTAQRQAAEKALEELEDMYGDALHGRKNYDPNLLRDYGHHVRWKVQKVLPDRFGEAKNRTGVEISDGSLKIVWETGTEDAS* |
LPaug09P1610mDRAFT_10004118 | F047364 | GAG | MAKNDFKIFKKQARLSKTKEKYIDVLLAMNVLPQCNEPMARMTLEAYWVYYTELSDSERRMRDVTRFVHGYVSKNIQDKLFS* |
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