Scaffold LPaug09P1610mDRAFT_c1000381

Overview

Basic Information

• Taxon OID: 3300000149
• Scaffold ID: LPaug09P1610mDRAFT_c1000381
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8261
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028551	Metagenome	191	Y
F029569	Metagenome / Metatranscriptome	188	Y
F077927	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_100038113	F077927	GGAGG	LKKLRIKEMTKYYNAETKNSLEMQFGSLVCKKIVIEKKYVYAKRIDTRTKQFGNQRKHNGEIGKYK*
LPaug09P1610mDRAFT_100038115	F029569	N/A	MNKLLLLSLVLLASCYSNKEHEEQTDFKTNLDSLFEAADGAVKLVTNNRKQKVLLEQDLWRKKRDIKEIKKIYSDSIWNLSNMYELNTLKMDSDSVQYNYKIVLREIVDTVRMIVTDTICDVCQTRQNKKDNRWYKKTFRWIKKTI*
LPaug09P1610mDRAFT_100038118	F028551	GGA	MDCLIQETVEGQELQNVVNMVHWRRSASEGTDGESDYYYADVYGAMPLTSPNPNDFVLYENLTEADVDAWLNEQTEPTPAEMDVQLAANIELQKNPTEETLPLPWNNE*