Scaffold LPaug09P1610mDRAFT_c1000210

Overview

Basic Information

• Taxon OID: 3300000149
• Scaffold ID: LPaug09P1610mDRAFT_c1000210
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11202
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008558	Metagenome / Metatranscriptome	331	Y
F060813	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P1610mDRAFT_100021019	F008558	GGAG	MFNNVGNPIDGWAIVKCESDKQPEIVSLHQCLGNAEEEKMVLNEISEGTNTTFVVKNTFGCMIEST*
LPaug09P1610mDRAFT_10002109	F060813	GAGG	MENAKKLKYIVYTQMNKRGKTGTFDNAKDAIKWAKENVYMFDYLKERKDTWEVLFEENLVWIDKGEVIEC*