NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPaug09P1610mDRAFT_c1000198

Scaffold LPaug09P1610mDRAFT_c1000198


Overview

Basic Information
Taxon OID3300000149 Open in IMG/M
Scaffold IDLPaug09P1610mDRAFT_c1000198 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)11514
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (24.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP16, Pacific Ocean
CoordinatesLat. (o)49.283333Long. (o)-134.666667Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009110Metagenome323N
F016148Metagenome / Metatranscriptome249N
F022198Metagenome215N
F027052Metagenome / Metatranscriptome196N
F044196Metagenome155N

Sequences

Protein IDFamilyRBSSequence
LPaug09P1610mDRAFT_100019813F022198AGGAMKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFMLVAPGRCLAIHENGNIAPLRLKESY*
LPaug09P1610mDRAFT_100019814F009110AGAAGMITSAVRYMESIKDKVPPAGEDDIIVKPGTTHMRTLGIDPHEAVKAVDKLRATGLMVKDACEQVGMTRSQYYKTKKGTTNRK*
LPaug09P1610mDRAFT_100019816F044196N/AMEDITNKLEHAKILINQMIGSHQGTPESATQYAIHQLGLPQDVASSLIQYANQVNK*
LPaug09P1610mDRAFT_10001983F027052N/AMTTDLDEARQYADTMLEALDVMGRAMYFCLNHPNASEFKAHRKLLIGAHERMGKDTTHFLSQIDEPEPPYEPTEEELSQHG*
LPaug09P1610mDRAFT_10001987F016148N/AMIIKTATYPYGPAKHMDADTLVQRLQVVSGYQRFVDDYVGALCDGDEYWISDRVSEKPKKRTGDQILTWLEESGIDPEFQYDVDMRPESVILYSKQGQSLVTYPYGTGCLREACEFVMDQEEREDI*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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