Scaffold SI47jul10_100mDRAFT_c1002454

Overview

Basic Information

• Taxon OID: 3300000148
• Scaffold ID: SI47jul10_100mDRAFT_c1002454
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4612
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 47, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028316	Metagenome / Metatranscriptome	192	Y
F035326	Metagenome / Metatranscriptome	172	Y
F105495	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
SI47jul10_100mDRAFT_10024543	F035326	N/A	MKNKVTTCGYFVKRLRDNGYTVNRIFNEYSTQDCRKWTVMIEPRAASLYITCYVNKDWNADQMFELNDGVNFKNLQLKTDSMEVILTKLIDKDILPSEESN*
SI47jul10_100mDRAFT_10024544	F028316	N/A	VKKATKNKNFDNLLKTSINAAEDISKGNEQGLSVINDYLSEYLKSFVLLGYDTKGESVVILAGKTAQDYDSLETLLRRVSNIDFFNNIQEEKDT*
SI47jul10_100mDRAFT_10024548	F105495	AGG	MHQPKEPRAIVGPSGDTARPVLKTVRMGNEVRVEAHYTDPRTGQFITKIPVSVTKVDDK*