Scaffold SI47jul10_100mDRAFT_c1002293

Overview

Basic Information

• Taxon OID: 3300000148
• Scaffold ID: SI47jul10_100mDRAFT_c1002293
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4778
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 47, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F036473	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
SI47jul10_100mDRAFT_10022933	F016734	GGAG	MNSKQEKQYNTALDKMDLTDSQRDAFDHSVKRSLIDLDSYQDTDTFSLHGYKLNRVMDDIVLAQYVDLAADGNSVIRNGIHIPLSQVRRTWRMARVILVGPKCNYTKPGDIVCFPDDKGIKVDNLSVTGFDSSIRDCLFLNEDRFFGICEEIEPDDSRAE*
SI47jul10_100mDRAFT_10022934	F036473	GAG	MLLSNVCEVKFARRNPKPGRPASRRMLCTNNVQLLNSVEGRTVLNYRPPRQAPEYNPNQENLIITWDILMQDFRTINCDTVDLITTLEADETFWVYINEKIAPMSAGEKMAFMNT*