Scaffold LPaug09P16500mDRAFT_c1011756

Overview

Basic Information

• Taxon OID: 3300000142
• Scaffold ID: LPaug09P16500mDRAFT_c1011756
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1665
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F006551	Metagenome / Metatranscriptome	370	Y
F089050	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P16500mDRAFT_10117561	F006551	N/A	SGAEEGTLGGSGSGHYDPWAANATIDRDSGTXFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL*
LPaug09P16500mDRAFT_10117564	F001625	N/A	MALTISTSDWTSANVRKTLSVQAALVSKLRIYSIKVTFGASDAYATNGVSADLKEGRISTLVAVSPTYTDSKLVVQYDKTNEKIKCFTGSGNGNILAEVPNASALVNSKIFEFLVIGY*
LPaug09P16500mDRAFT_10117565	F089050	N/A	MVELNHNVISFNSDTLIKGGHGVLVSVFVTKVGTGSNKVEFRNGTTASAT