Scaffold LPaug09P16500mDRAFT_c1004045

Overview

Basic Information

• Taxon OID: 3300000142
• Scaffold ID: LPaug09P16500mDRAFT_c1004045
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3372
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F062151	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P16500mDRAFT_10040452	F005948	AGG	MVELNHNVVSINSNTLIKGSXGVXVNVYVSKVGSGSDKVEFRNGTTGSSPIECTFYTAAQGTYVGINRRFEAGIYAKCTGSAEITVVFK*
LPaug09P16500mDRAFT_10040455	F062151	GAG	MGSAIYDAADTVVSLLKDNWTSGRLPNVQKAWDKRSVGFGDSRSPQIIITPKTENVTYFGLYGSDFWHDVTIDLDIRSYQNDVRHNNIVKEVNKIIKAKIRGVDDYTDIRIIASYSRSHYMRNMFNHIVSVSLRKLNPS*