Scaffold LPaug09P16500mDRAFT_c1003990

Overview

Basic Information

• Taxon OID: 3300000142
• Scaffold ID: LPaug09P16500mDRAFT_c1003990
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3405
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004768	Metagenome / Metatranscriptome	424	Y
F008561	Metagenome / Metatranscriptome	331	Y
F016284	Metagenome / Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P16500mDRAFT_10039901	F016284	GAG	MTSKTLKDMRKELLDKYSGKMTGYEHLDDGTGDYAKTVPKDTEKESEKTSEKT*
LPaug09P16500mDRAFT_10039906	F004768	GAGG	MKTATIAILEEGEFIFGSRTNGEYFVRRYEDGEEMGGSFFKTMEEAETDVREYQQLNG*
LPaug09P16500mDRAFT_10039908	F008561	AGGA	MKFDELIEHYERAIGFNSTVKGVPMSEENLELCRNFVSDIHGCPRQDVRVMYRGPRTSYAHATLRKDALSFDVYCTPRYS*