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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000142 Open in IMG/M |
| Scaffold ID | LPaug09P16500mDRAFT_c1003201 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3912 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | P16, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.283333 | Long. (o) | -134.666667 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004989 | Metagenome / Metatranscriptome | 416 | Y |
| F036742 | Metagenome / Metatranscriptome | 169 | N |
| F044148 | Metagenome / Metatranscriptome | 155 | Y |
| F099860 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| LPaug09P16500mDRAFT_10032011 | F044148 | N/A | PGECPLKTKDGKEGKLVEGQDTSWIDPHARKVERKWKSMNKSARKKWLQTMADKAEDNDTKQEVLDDVLDDYGLTEAYTDLRGDGDEGTTTSDPDKDYGLHQFSDPKYVPAYTDQSFQTAPDKTGIGQNLGDKQSGTPKKAKGQATAAKSPAKVDAKGGMDKPAVGTKSDTPDKATGKATAAKISPKVTTKDGVTTQVESIGMNFVRKFYQKGDK* |
| LPaug09P16500mDRAFT_10032013 | F036742 | AGGAG | MPLWSSSLAQDSMEYEFDVTPGVGALEFTIHDNILLNGTDGAPATNAGFRLLLEEQIEKRPTWLNKDEQANCFANNEGWWLRHTKNSAGTQYWDECLVALGGLTGTSATTGLGVAQITHVSFEGVTSGSANDSPAYSVSSSGTLATAYVQVVWNEPVDYVLSTLPTLVVTHTATR* |
| LPaug09P16500mDRAFT_10032014 | F099860 | N/A | MEAVGAEWDTIQMNSTDGAPESNAGEKIILEDASESDDGDMTFLQMEKQTTGTKMNYFFTIAGSDGAGSLTVARQAITLNSSTFKEAGDTETSDSGIMQQVSADITSAAVTMA* |
| LPaug09P16500mDRAFT_10032016 | F004989 | AGGA | MSIELEDLNTEKERLEGDRKTLLERLQEYQQGLTQTQQQIQAIGGAIQTCNFFIGKIQSPQESEKEEEVQF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |