Scaffold LPfeb09P26500mDRAFT_c1003440

Overview

Basic Information

• Taxon OID: 3300000140
• Scaffold ID: LPfeb09P26500mDRAFT_c1003440
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2565
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F012919	Metagenome	276	Y
F018265	Metagenome / Metatranscriptome	236	Y
F051476	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
LPfeb09P26500mDRAFT_10034401	F012919	N/A	YIMKISRKKLNLEISKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTVSDTPTTKQQISYVEKNSL*
LPfeb09P26500mDRAFT_10034403	F000615	GAG	MCRIRSFYECYDGTMGFAEMVVSYEEDIAGLIRHWGTGGRMVITEHIDLV*
LPfeb09P26500mDRAFT_10034404	F051476	GAGG	MTYWKVKLIIKEKLHKSELFESLAKARLWSMREAKLVVADRLFNTTDIVAEITSHEFA*
LPfeb09P26500mDRAFT_10034405	F001048	GAG	MKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVRKRVRWELGSEGMAVWDACGYKDIPTLAKAYRIS*
LPfeb09P26500mDRAFT_10034408	F018265	GAG	MSMEMHTLRAVKLTQNIFAINRVNRELVIVRKIVEDLEQRKMELLSS*