Scaffold LPfeb09P26500mDRAFT_c1002460

Overview

Basic Information

• Taxon OID: 3300000140
• Scaffold ID: LPfeb09P26500mDRAFT_c1002460
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3169
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F012070	Metagenome	284	Y
F017906	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
LPfeb09P26500mDRAFT_10024601	F017906	AGCAG	LSAHINNNVLDTCGIEGGEKGQFDIFRNGELFLSKEDMGRFPTKEDVDAMIKELEPFSE*
LPfeb09P26500mDRAFT_10024603	F007608	AGGA	MSQENKYEKLPNSMYPKIRQQVVDRIATFEKVIEDHAVAQKEALKMIYEQLEEAKNDLKYLDEVN*
LPfeb09P26500mDRAFT_10024604	F006364	AGGAG	MELELDNDTRKMRIINYLDYMDDKSLQEIAAALYNLSVRRREVKERKEMIDESGK*
LPfeb09P26500mDRAFT_10024607	F012070	AGG	MPIDVKINEDDYILYEILCDYCDEEYVIKYKMKDEKPKQAIECCPFCSNLIEEPAESIIHDEETGWD*