Scaffold LP_F_10_SI03_10DRAFT_c1002809

Overview

Basic Information

• Taxon OID: 3300000137
• Scaffold ID: LP_F_10_SI03_10DRAFT_c1002809
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample F_10_SI03_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4375
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013467	Metagenome	271	Y
F020463	Metagenome / Metatranscriptome	224	Y
F043619	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_F_10_SI03_10DRAFT_100280910	F020463	N/A	MYITLSLTPDRDGFQGTIALNTEKIIGFKEAAYKDIGGNSQKDKAGYVGTYTEVLMEGSKFPINVADPVQSILRNYGNNLDETK*
LP_F_10_SI03_10DRAFT_10028096	F013467	GAG	MTIGELKNWVWCEECLEWKDADEVTFVSIEEDSLGQDLMTFECDRCTKTNVNNIVSSVTKPRGG*
LP_F_10_SI03_10DRAFT_10028097	F043619	N/A	MREEQYWKQGSGEVISVGDMSEHYAKNVLRKMIKKSRQRGQDVLVMRDKISQINNTLNDIKRDLL*