NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold SA_S1_NOR02_45mDRAFT_c1014579

Scaffold SA_S1_NOR02_45mDRAFT_c1014579


Overview

Basic Information
Taxon OID3300000133 Open in IMG/M
Scaffold IDSA_S1_NOR02_45mDRAFT_c1014579 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 02_45m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)935
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameNorway: Adventfjord, Svalbard Archipelago
CoordinatesLat. (o)78.237209Long. (o)15.677776Alt. (m)Depth (m)45
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087762Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
SA_S1_NOR02_45mDRAFT_10145793F087762N/AKMKNLLLVLALTTTLLSNAQVNKMEGSWVSETSSYVMTIITNDSKPVKVFNTSFSENRVIEEYIVSSDSESFTTKLHNPENNYYVDIKYVLKDSNTMLCYYTGDLNKTIVAKKLSHFYIE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.