Scaffold SA_S1_NOR08_45mDRAFT_c10000019

Overview

Basic Information

• Taxon OID: 3300000128
• Scaffold ID: SA_S1_NOR08_45mDRAFT_c10000019
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Adventfjord, Norway : sample - Svalbard Archipelago station 1 sample NOR 08_45m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 44234
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: Norway: Adventfjord, Svalbard Archipelago
• Coordinates
  • Lat. (^o): 78.237209
  • Long. (^o): 15.677776
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y
F056630	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
SA_S1_NOR08_45mDRAFT_1000001921	F022460	N/A	MATVKNDRTGFPSLYRATYEEGWELKNTGYDYSKTLLKITMSNYMFRNIHLGKFLNDYLTPIMVFYINKVKYLRIYYNFAVPKWYQKIN*
SA_S1_NOR08_45mDRAFT_1000001923	F048317	N/A	MIRDIYSRDATSPKYNENTLEVSDTLSQLILKIENCLFTRKGDVLGAANLGANLDELIFSLVLNENTIQNSINGQISAYCLPDIAGFDIDTKVSFFSTLERDGCLVDIFVNEQRVIGALF
SA_S1_NOR08_45mDRAFT_1000001931	F017335	N/A	MNIKSLTLKNRLTDDKTGQQYFDLTAASFKYKRELGVKALHYVTQDQVGRIDKISRIYFGSEQFLDAICVINNIFNPFSVQEGDILAIPNLQNQNIVYKRPNAASRPSASLAQYVNTDVQSEIDQSRIQRLIQKAKTKKTGVKAPIPPNMLQQGQAAKTFAGGKIKLGANLPTRNSNTQT
SA_S1_NOR08_45mDRAFT_1000001933	F004606	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGIILDSKWDPVNPLYQIRIIKFYDNMRFLKQHFFDMNFRHLFENRARKMILKAEDFKTAKVLEDRLNEKDRERFYVIIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISSRSFFKGPLSIDSVREFDARYKKGWADKFEKGKLNIDKYLNSLG*
SA_S1_NOR08_45mDRAFT_1000001935	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGKEHFTSTDVYESNENDKNQYSYVKRFFFDLCDDLGLEIGSKFDKTVLDINTKWGTHYEPTAKDIEFKIKRLKSELKVLEEWKNI*
SA_S1_NOR08_45mDRAFT_1000001937	F056630	N/A	MTKEKEVIESKHWQWIKGDETGSVVTIKDEDGEWINFTQGGRLAQALKAEYLQELDSDIAGEFVKTTNSVVDPLNQSSALISQIAETTSAVPALETTLSPIRVLFNKQKKNNKVKLLLEFPVNIPVKGVYDLMSTSFDKDEVDEQLFSFVVDQLSQDEITDCLLDSIKSLIESKYKGE*