Scaffold SA_S1_NOR05_45mDRAFT_c10024798

Overview

Basic Information

• Taxon OID: 3300000127
• Scaffold ID: SA_S1_NOR05_45mDRAFT_c10024798
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1758
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: Norway: Adventfjord, Svalbard Archipelago
• Coordinates
  • Lat. (^o): 78.237209
  • Long. (^o): 15.677776
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019651	Metagenome / Metatranscriptome	228	Y
F067130	Metagenome / Metatranscriptome	126	N
F085730	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
SA_S1_NOR05_45mDRAFT_100247981	F019651	N/A	MTTLEKFQEEANIKFIQTPSLADVEIGELNTADGYELFYITQDVQNLQFDNEVYYYKPNFDTIMKEIDLVKRYDDQIMDVACFDIDEYFDEYDMLNYLESEMDEESFEAF
SA_S1_NOR05_45mDRAFT_100247984	F085730	N/A	MNYKEENWYNDIVDRLKDHENMDQDEFYDALYQEIDNMVIYNSESQRIVDDLNYDVFQEHDVYGRADNIGEAAYAALSDLFEEGDFTYEDYSNKPITQ*
SA_S1_NOR05_45mDRAFT_100247985	F067130	N/A	MQIEIDTIDLQNTLEQLYDRKLKLVAYATADDIDTLVLEGHEEDLFTFYYECFNPFNEWTNTDVVRSEFHAHVITK*