Scaffold SA_S1_NOR05_45mDRAFT_c10003429

Overview

Basic Information

• Taxon OID: 3300000127
• Scaffold ID: SA_S1_NOR05_45mDRAFT_c10003429
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4963
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: Norway: Adventfjord, Svalbard Archipelago
• Coordinates
  • Lat. (^o): 78.237209
  • Long. (^o): 15.677776
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
SA_S1_NOR05_45mDRAFT_100034292	F017335	N/A	MNIKSLTLKNRLTDETTGQQYYDLTAPSFRYKRELGVKALHYVTVDQAGRIDKISEKYFGTSSYVDAICVVNNIFNPFSVEEGDMLVIPVLQNESLVYKRPNPASRPSESLSQYTNTDRQSEQDQSRIQRLVQKAKTKKTGVKSPIPPNMLQQGQDAKIYAGGKITLGANLPTRNNTNT*
SA_S1_NOR05_45mDRAFT_100034294	F004606	N/A	MKTHRIFNKGQTVYCLLASHTNPNILLPVKGVILDSKWDPVNPLYKIRIIKFYDNMRFLKKHFFDMNFRHMFENRARKMILKAEDYKTAKALEDRLNDKDRERFYVVIESVMCTKTKVGLSELFEKVQFYMISKNLKEIREISTRPFFKGPFSLDSVREFDARYKIGWDDKFKKGKLDIDKYLNSLD*
SA_S1_NOR05_45mDRAFT_100034295	F008190	AGGA	MEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDYYQAEPSDAVVSSYLMRQLQNAISRNISTTIFYVLGNLDNDTVCGVKEYVSSLSTKTITYKIYHSPDVNVNGAAVLFDDIIEFE*
SA_S1_NOR05_45mDRAFT_100034296	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYEVTDNDKNKLEYIKRFFFDLCDDLGLATGSKFDKDVLDINTLWGTHYEPTVKDIDQKIKRLKNELKELEEWKKNI*