Scaffold TDF_MC_ARG01_113mDRAFT_c1001355

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TDF_MC_ARG01_113mDRAFT_c1001355

Scaffold TDF_MC_ARG01_113mDRAFT_c1001355

Overview

Basic Information
Taxon OID	3300000125 Open in IMG/M
Scaffold ID	TDF_MC_ARG01_113mDRAFT_c1001355 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 01_11.3m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2233
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	MC site, Ushuaia Bay, Tierra del Fuego, Argentina
Coordinates	Lat. (^o)	-54.810872	Long. (^o)	-68.295525	Alt. (m)		Depth (m)	11.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047678	Metagenome / Metatranscriptome	149	N
F100687	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
TDF_MC_ARG01_113mDRAFT_10013552	F047678	N/A	MKLSEKQLEQISGAIITSFVNLHFLEEAKASGLFRHQTKKHVNRVINDLIEIENNYFAKVEEVDDKDLGDKLVANKLEFVKWILNKFTFNDFTKIQEICIAYETDKEKLIKASDDILIANGVEKVE*
TDF_MC_ARG01_113mDRAFT_10013553	F100687	N/A	MDTKLKNIIKIIQPEFESEDSWYNEQLPNEVSLYLDTDDCLIDLHLKDDVLQTNIWIEDEEYNLTDEDANFVYEHLNKLLDDEIELTKRYYNEEKYEQNRF*

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