Scaffold BS_KBA_SWE12_21mDRAFT_c10089261

Overview

Basic Information

• Taxon OID: 3300000124
• Scaffold ID: BS_KBA_SWE12_21mDRAFT_c10089261
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 765
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: KBA site, Vaertahamnen, Baltic Sea, Sweden
• Coordinates
  • Lat. (^o): 59.363333
  • Long. (^o): 18.119167
  • Depth (m): 21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012964	Metagenome	275	Y
F021645	Metagenome	218	Y
F075993	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE12_21mDRAFT_100892611	F021645	AGGA	MQYGLRKSLEDIAYELKGIKNILGSMWHSRYSTGETDALNPEAFADEYIST
BS_KBA_SWE12_21mDRAFT_100892612	F012964	GGA	MEEQIPPSQPPMPQTLEGQITPEMLAQMKARARELAIQQTIAQQAVIPQQQPQVVYVRRNLTVAEILLVILLSCGIVTGIQWSWNIVTNVLPRVEIKVR*
BS_KBA_SWE12_21mDRAFT_100892613	F075993	N/A	VANRRISEFPAISGGEIDEQDLLTLVHVFEVDPTLRNKKITFTQFKEYLNEYYAPASGATFSGNVTISGNL