Scaffold BS_KBA_SWE12_21mDRAFT_c10003190

Overview

Basic Information

• Taxon OID: 3300000124
• Scaffold ID: BS_KBA_SWE12_21mDRAFT_c10003190
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5808
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: KBA site, Vaertahamnen, Baltic Sea, Sweden
• Coordinates
  • Lat. (^o): 59.363333
  • Long. (^o): 18.119167
  • Depth (m): 21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043698	Metagenome / Metatranscriptome	156	Y
F084229	Metagenome / Metatranscriptome	112	N
F097318	Metagenome / Metatranscriptome	104	N
F097332	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE12_21mDRAFT_1000319013	F043698	N/A	MADTTKPIPAEVTNVYASKAARIMKPSDKQRVSELEIVDDNATGDVVNPDTLQVKRTFKDCQQAHSAYRRLKQQNTERNRKNQLIQKKLNNEPPYSAKKLESMGQNWRSNRPTGFLSTMVSRLQPPFKQVIEQSPTLTYSKYPLEGVSEEHKTKVFREEITKCIRGWKGHDDLVAQVTHENTTFGFCAVCWDDVRDWKPEFLRQDYTFFSIETPQE
BS_KBA_SWE12_21mDRAFT_100031903	F097318	AGG	VNTLEHYIQYKRLNATKVMNALQLNGIISDECIFPDDVRDSGQAVYWLEDHMGEVHKS*
BS_KBA_SWE12_21mDRAFT_100031906	F084229	GGA	MNEPNLAQKAVSFVKSAAAFVRAGMPIRNKEQIEERLMICSQCVHYDPTAFAGVGKCGVCGCNMEIKLVMDTERCPLDHWT*
BS_KBA_SWE12_21mDRAFT_100031907	F097332	GGA	MSIRSLDMTREEAQRKSNEDYMCGRISKGEWDFQFEELGNVRIWSKDGKIHQLKEEHERLRPDNGTTK*