Scaffold BS_KBA_SWE12_21mDRAFT

Basic Information
Taxon OID	3300000124 Open in IMG/M
Scaffold ID	BS_KBA_SWE12_21mDRAFT_c10002449 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000124 Open in IMG/M

Scaffold ID

BS_KBA_SWE12_21mDRAFT_c10002449 Open in IMG/M

Source Dataset Name

Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	6660
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6660

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	KBA site, Vaertahamnen, Baltic Sea, Sweden
Coordinates	Lat. (^o)	59.363333	Long. (^o)	18.119167	Alt. (m)	Depth (m)	21
Location on Map

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Source Dataset Sampling Location

Location Name

KBA site, Vaertahamnen, Baltic Sea, Sweden

Coordinates

Lat. (^o)

59.363333

Long. (^o)

18.119167

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F040160	Metagenome	162	N
F058252	Metagenome	135	N

Family

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE12_21mDRAFT_100024492	F058252	GGA	MNTNNTFESRIICEGTEVSESQTKILFRQRFNQCWVSKIDIRVKETLGFLDGEKMIRIVVPEDVANTLELEGMLD*
BS_KBA_SWE12_21mDRAFT_100024493	F023326	N/A	MSRVFSSNKGIQKYGMKFSENMDDLGIELYCYAISRGDYGKDYCVKHNINLKDFKLLTPAEHFINAVKLQWPTEVSIYNRGYTNTQLLRTLEELCNNTDICLAGAASMGKSFPVALWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCARIQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARVNLSANDDVTFIGIGNPSAGDNPHTRWAMPKGKSNFDSVNPDLMDWETETGICLFYNGMKSPNFDARPDEPSPFPFLMDRKKQEMMLKQCYGDENAIDYVRNAIGWWPKSGFIQTVITSDLIRNADTNEEPIWDSEGFTKVAGFDTSFTIGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVSLCRESGVKPTKFGMDVSGDGGRVGQAIIREWLRTDSTGAAIALISSMGKPTDRIAAEVDRRPCNDVYDRLVSEYYYSAYHAFKSRVLFGIDANSDLARELCLRRYTLKNKKIAIETKDDLKKRTGYSPDLSDSLIYALEMARRNGLVFIGNDKPVPTNRFWAREEKLVEYSQDEEYSVDDWGED*
BS_KBA_SWE12_21mDRAFT_100024494	F021128	AGG	MKLKNKNLAPVGGWYWKYEIKRNGVVYPAIVYGSTWNSLLQNIQKDYRSNGVEIPSNIEQMVEDQTCQRQPSDRCWYNDGLGDRIAQAIHTVAAATDKVLGTKLEHKARGCSSCNKRRNALNSLS*
BS_KBA_SWE12_21mDRAFT_100024496	F040160	N/A	MTTEKVKSLCAAISSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKAVGKYKEPTDSTIDPDLDEI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold BS_KBA_SWE12_21mDRAFT_c10002449

Overview

Ecosystem & Geography

Associated Families

Sequences