Scaffold TDF_OR_ARG04_113mDRAFT_c1018037

Overview

Basic Information

• Taxon OID: 3300000121
• Scaffold ID: TDF_OR_ARG04_113mDRAFT_c1018037
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 836
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: MC site, Ushuaia Bay, Tierra del Fuego, Argentina
• Coordinates
  • Lat. (^o): -54.810872
  • Long. (^o): -68.295525
  • Depth (m): 11.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016596	Metagenome / Metatranscriptome	246	Y
F018080	Metagenome	237	Y
F052205	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
TDF_OR_ARG04_113mDRAFT_10180371	F016596	N/A	MTKKYSLDKIRKSRNEFEALLRIYGISNLQLCKIIEVNYATSSKFIAEPTRLRFIHAKRLADSIGLNIQDIIDTIVYDLN*
TDF_OR_ARG04_113mDRAFT_10180372	F018080	N/A	MGYLKIEIFKHFLKTYTYIIWEDKHILGFILEDDIMKLLDKKQLVDFYHFDKTIFKVEKSKIHKYITKDD*
TDF_OR_ARG04_113mDRAFT_10180373	F052205	GAG	VNDEWLDNLLDGKPTPITYRQLVTIECNIDQTSLTTRMKSEIINRINDLSQLEAEEIITKLYNNRYEKDTQKQWLKMFRDGVFEDRDF*