Scaffold TDF_OR_ARG04_113mDRAFT_c1005510

Overview

Basic Information

• Taxon OID: 3300000121
• Scaffold ID: TDF_OR_ARG04_113mDRAFT_c1005510
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1726
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: MC site, Ushuaia Bay, Tierra del Fuego, Argentina
• Coordinates
  • Lat. (^o): -54.810872
  • Long. (^o): -68.295525
  • Depth (m): 11.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049942	Metagenome / Metatranscriptome	146	N
F053660	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
TDF_OR_ARG04_113mDRAFT_10055101	F053660	AGGAG	MRARKYEMKPTPHAPSKNHPNTTFKKWVGDRTDLGLVKGKTYTWTEFGATVGIVASSMRGRVRGAKEVSDCHMWKAGERKPKAEWGVTTITRCETDADR
TDF_OR_ARG04_113mDRAFT_10055105	F049942	GAGG	MDIDYLNDLDRGDFDCREGYPHKEGQSNAYDIGYGARYVLEQMQSA