Scaffold KGI_S1_ANT01_95mDRAFT_c10008355

Overview

Basic Information

• Taxon OID: 3300000119
• Scaffold ID: KGI_S1_ANT01_95mDRAFT_c10008355
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 01_9.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4847
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: S1 site, Potter Cove, King George Island, Antarctic Peninsula
• Coordinates
  • Lat. (^o): -62.230512
  • Long. (^o): -58.656117
  • Depth (m): 9.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027845	Metagenome / Metatranscriptome	193	Y
F039623	Metagenome / Metatranscriptome	163	N
F103244	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
KGI_S1_ANT01_95mDRAFT_100083555	F039623	N/A	MELLDSNNIISFRKFKCLITNQIYEIVQTECTGRYLINAIDTLVRSDGLRKSFARMELRTRFSNIEGIPEIDYLNKKKKKR*
KGI_S1_ANT01_95mDRAFT_100083557	F027845	N/A	MTQTEIIAAVKGIHAEVDHEGVDIVYNDNNYDYDIRFTSWDCLFTIEVYSKDSEVPLAILPKTMTEIFDYTVDLHSEYMRDIDSMIDTRDYLDVYSN*
KGI_S1_ANT01_95mDRAFT_100083558	F103244	N/A	MRVEDLTSYENDKSKVTVYMESDTDGSYHFLKHIEEKGSDNEQLIRYSLEMFLSEYYMIEKFIKGNLVADRKFYKQVVNLKANRNG*