Scaffold TDF_OR_ARG05_123mDRAFT_c1001403

Overview

Basic Information

• Taxon OID: 3300000118
• Scaffold ID: TDF_OR_ARG05_123mDRAFT_c1001403
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2621
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: OR site, Ushuaia Bay, Tierra del Fuego, Argentina
• Coordinates
  • Lat. (^o): -54.80407
  • Long. (^o): -68.288208
  • Depth (m): 12.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
TDF_OR_ARG05_123mDRAFT_10014033	F005243	N/A	MADFKTNENLQDKDPKMSKKEMAERREEITAFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMYMAQQYAAQKGEGAPDPESPEGKAFQDAMAKAMTNETA*
TDF_OR_ARG05_123mDRAFT_10014035	F004866	GAG	MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKGIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLIKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESQES*
TDF_OR_ARG05_123mDRAFT_10014036	F006666	N/A	VNPKNHKDLRKGIADEVGVHPSVVDDFISFYYAKVRKKLSTLAYPRINVDGLGTFYLRKNKLDKAILKNKSLLGNITKRTYNGFAQSEDIQKNIVEMESAMMHLEKDIKIKKKFRNER*