Scaffold DelMOWin2010_c10080243

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10080243
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1274
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006958	Metagenome	361	N
F060431	Metagenome	133	N
F089524	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100802431	F089524	N/A	ESLSVRRIAPTKGELQHIDLDKWLQYLEFKVQEHIKVCQSKDYLLKRITEDNEHNKNFTRRNNYVKLLSNRS*
DelMOWin2010_100802432	F060431	AGGAG	MSNFYLTDPNILTASLTDQEFKIYHYLCKNYNVQKHTAYVRKVDIAGLFQLTVNEVEEILVKFCQIKVNGLPLMKITKEKYEIFGMPSHKKFLEQVGFKQNNSSYGYKAIKGYLKQLGQQEQETLKNFIYPTLDQYELQEKLEELPTEELKKIKPDQLKYKWILRDVIKNRP*
DelMOWin2010_100802433	F006958	GGA	MSSKIDHELNQYIFVRSNIVNILADAAIAERFIRAPNNNRSPSMYQMLETYYDKKDWGYHVEPKLKLRGTPKQMQNYDTAIDLLLMIDTDISEDPVLMRKISWMRANRNKWTSIGKYFGIHRTSVKRMYDNVLDKLSNKIIIESVDILIKKFS*