Scaffold DelMOWin2010_c10072762

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10072762
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100727622	F003020	AGGAG	MPDTSSFKSVSVSVTTHNQLKTLAENRFEVPVSIQKVIDFMLEKELKKKNGKTR*
DelMOWin2010_100727623	F004988	N/A	MVKLVETICPRCNGNGYIVVQNEDIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGE*
DelMOWin2010_100727624	F083388	AGGAG	MVGMLMQKRIANIEWVMKRCSPDFKPVWERKLEQLINRRVEMAYERMVENARSVH*
DelMOWin2010_100727625	F030928	GGAG	MREWLKTLEAYISFCILGFTIFICVIVIIVNCRYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFD*