Scaffold DelMOWin2010_c10069897

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10069897
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1422
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F059345	Metagenome	134	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100698972	F059345	AGGAGG	MNIEHTKLESIHSALQELQQEFNIPDDHEHLENAFKFTEDLREKHIKEQD*
DelMOWin2010_100698974	F059441	AGGAGG	MKTWSSTITYTVFDMGADCETKEDYIEYVKETFEQEHNIYLRDDEITDIQKEDSYNE*
DelMOWin2010_100698975	F004856	AGGAGG	MSDWIEGTKPKIIEARYSAYLSWDLDELGIDWDEVEDWDLSRADLEITFKDGTKKSYENWQDLAIDYKHNFEEVLILDEDWHKVEGLN*