Scaffold DelMOWin2010_c10068458

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10068458
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1445
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F003357	Metagenome / Metatranscriptome	492	N
F029115	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100684582	F000302	AGGAG	MINTMTQDTKDRIAELERQKIDLENQLELLGYSGNLVRMHQIEEEIYEIEDTIRKLLP*
DelMOWin2010_100684583	F029115	AGGAG	MDTKIEKQIIDFTRLTGLTERITMSHGTLYVTLIQPEQCDHFHKVLRTFFVDNISSDGGVNMYAVGDEFAFDFVPADREAPVFAEPYSDEKYSGKEIMDNTEMGIWSEFAEDELMNNIPQDVDTMLDLENDAKEGR*
DelMOWin2010_100684584	F003357	AGGAGG	MTRNSWILKQIYTDAKNNLGWVFKVILMAGGFIAGIKLLMFFSVPKEIVFPVLWTAFILVAIYHWYSMKYDWKKNESKYDRASKRYMKKLKGGK*