Scaffold DelMOWin2010_c10063793

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10063793
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1526
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F016757	Metagenome / Metatranscriptome	245	Y
F100955	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100637932	F100955	AGGGGG	MIKKYTEEQIANAVTNCVESWDMDTLLMYSTEMLHREYMDRSRPISHIDDLIKEFGDG*
DelMOWin2010_100637935	F016757	GGAGG	MLPRTWEVKVEATTTREVIVHANTEYEAQIKAQIEMVGLVGGENTKVLAVKETTDA*
DelMOWin2010_100637937	F003073	N/A	MAKKLKNMTQDERIAYWENIREKERLNRRNRIAKLSMEQRVAVININKLLDTVLDVALYPDMGGIKAVTAYDLQELSDAMDALQYQFNLRGE*