Scaffold DelMOWin2010_c10061706

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10061706
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1567
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F008731	Metagenome / Metatranscriptome	329	Y
F037990	Metagenome	167	N
F106144	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100617061	F008731	N/A	ATKPLNDGTQGFRFNFAGLKGLTRKRKHASRGFKVTRNDCMTALHIGKRTVYVERKPNRDTERRLRHFAG*
DelMOWin2010_100617062	F106144	AGGAGG	MGNRATIEIKDGSGYKSACYIYLHWCGDPEQVTEMVTLAAPVMRRSDSSYATARLIGMYHDAIEGGLSLGVTDFKEEWDNGHYIVDMSKGTIENEGEVIACNINFGEF*
DelMOWin2010_100617063	F006728	GGAG	MAKLDFNNIVVRHNGRTISIAQHWTRTSDGDFVNVQEIADIDDLHHCEDYDPIRFDDTVDGLINALQAIKKDIEQ*
DelMOWin2010_100617066	F037990	GGAG	MKFDKPTARKIRDAMQEALDKADVNGVTIKVGNCSFTEGEATYKVKVLIDGAKSKDEEALEQMATLMGLSTYKIATLQGMRVSLVSYNSRARKRPWVVQDLTNTQKYIIDDDTAKRLFGVVVETVRDDWIDQI*