Scaffold DelMOWin2010_c10056367

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10056367
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1686
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F008684	Metagenome	329	Y
F074747	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100563671	F002485	N/A	SLYQKIQGDKTIFYSYNTTVAVKTPIETYVCENVWSVTTAKHLNKIEELTGSDKDYRMKYQDFREFCINNNIDKHYI*
DelMOWin2010_100563675	F074747	GGAGG	MNIKYIVPVGSKITRKFYCPVLRKQVSLTEDFTEDEIVFNSNELRTVDSGHNFSYFRFTVSATNYDGQLTIKKFDVDYSVSAEYVEIKKQMEVA*
DelMOWin2010_100563676	F008684	N/A	MKIKDKNFDIACQLADDLYFKFIDSLEKNIANQYVIEDKDNIGCTKNTEKGSELYWDIENTIKNILDKQMEVA*