Scaffold DelMOWin2010_c10052375

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10052375
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1789
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013481	Metagenome	271	Y
F062717	Metagenome	130	N
F097247	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100523751	F097247	N/A	LSHKNEIVPDKRQQAFVGQLWVGRKRYRRVLARFAEVEDLPEEQLNALLVERLLDLKKRLTREVEASTDKDGLFFSEVLRLFLAHVEANRDKLTVRQYRQQLSRYQKIVGDYRIRLHSS
DelMOWin2010_100523752	F062717	N/A	MKQLIEITKKKLGYRYDREIAEALNLTKSGFSQKISRGDFPFSEIRQLLKNQNIESDWLDDAEREMNRTDSTSTLNSEVQLLKEKERTITIQQSYIERLEKTIERLEEDKKKRNQTIVPEYINQPYNQTISQL*
DelMOWin2010_100523755	F013481	AGG	MNDLELREELASIRNLLTEVLVNQDILSKKISADVAIQATQAERAVEIARLQKTALKAIRKTATVD*