Scaffold DelMOWin2010_c10047313

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10047313
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1928
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043149	Metagenome / Metatranscriptome	157	N
F045772	Metagenome / Metatranscriptome	152	N
F070551	Metagenome / Metatranscriptome	123	Y
F097237	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100473131	F045772	N/A	AEELVNALNNQNTNTTKPVSIKDEIKKQTTETKLTALYSNWKKNNNSDQEIEKLFEQQQRQIQKIGGTNVNKW*
DelMOWin2010_100473132	F097237	AGGAGG	MSTNGNAKQKDWVLFPYKADDERAVKISFSGNVILDNEKKGTILGVKGVSKDGKSKFVRIFAQVGVVFKGXXKFTGEMNYPDAGGXXGFNRLVKR*
DelMOWin2010_100473133	F070551	N/A	MQEVXKALIGWLNDEGTILSGYKNEPKPKDGKAQSKEIPF*
DelMOWin2010_100473138	F043149	GGAG	MALSNSNVRLYAKLDKAHKKIMGAKDKGRQCVHTLNNFKEYNQLFRRIVEAENKDARFLYT*