Scaffold DelMOWin2010_c10037467

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10037467
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2283
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100374672	F002374	N/A	MNQVLLYVSVILASVSFFLCCYACARVGKLLKSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQNNVTDINKKILGG*
DelMOWin2010_100374673	F013311	AGGAGG	LAFLGDFGKFFGLGSSEEVLGNVGEVAGTFIGGPGGGKLGRSIGETVGDATSSLAGGSASPLSTADQALEQSAVPVSQKGNLPQETSTFTGITGMTQQAGFGSLLPSIIGGARSVFPSIGKFVSTPTGALVTGVGTSVGVNMLTGSDMGKMKPVLTQSRRNKARVRQLVNFMGIDGAAQFLSQASGRTITGGDVVQLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAMRRASSTTLIKN*
DelMOWin2010_100374674	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRIASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYINNDLLTTGSQRNRVLVRFTNDTAATRTIRCGIFIGG*