Scaffold DelMOWin2010_c10029895

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10029895
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2672
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002859	Metagenome / Metatranscriptome	525	Y
F007401	Metagenome	352	Y
F071754	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100298953	F002859	AGGAG	MDKLTASSRASSLRQRKGESMLAIIRPDLYEYHALPMTDELFWRRIENLRRAALTAESFEFRLLYYNQMMELMKRCP*
DelMOWin2010_100298955	F071754	AGGA	MYITLPDSPVRKIFKCDSCENYHIKFFDPKHDRTYTPXEWEQIXTDGKEALYKALRVVREXPKFFA*
DelMOWin2010_100298956	F007401	GGGGG	MLMSDKEILKQRELLDTLLATRTSQYERVKSIKVMDSIYFKKKLPKNVILFPLDRIKRYVHHTTRQPRKKNI*