Scaffold DelMOWin2010_c10028732

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10028732
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2747
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F024320	Metagenome / Metatranscriptome	206	Y
F030293	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_1002873210	F030293	N/A	DRVSIEALGLIPHFFERSLYIEGQSIQSVANKMDSLYHYGGFVYPFEGTIVDNKGRYLADNDEDGPLDPIAKITKLGFTLWVYPYSIVGLTDDKGNQKIARFD*
DelMOWin2010_100287323	F001655	GGAG	MKQPDNDHVKHFGNDGSIHNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFENFEASVRRTAKALAESYTYWPEGYVHVQTIINQEYVNIV*
DelMOWin2010_100287324	F002858	AGGAG	MAIDEKSIYLVDGGDYQIYCFGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDRGNVVMPRVTLDRILFIASDELPQAESEL*
DelMOWin2010_100287326	F024320	AGGA	MTIDEYATDSGILDDNSGPTVDPETHAMVEHLVEFDTEMYRLQSRRKYKGLSYRHLERLMIDLHGEYWRDAL*