Scaffold DelMOWin2010_c10023598

Overview

Basic Information

• Taxon OID: 3300000117
• Scaffold ID: DelMOWin2010_c10023598
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3141
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006940	Metagenome / Metatranscriptome	361	Y
F025618	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOWin2010_100235982	F006940	GAGG	MKRLSLDDISNAPSLPEKEIEIEQWNATVLVTGLTKADAVEINKQSEKDGIRDEVLFEKLLLLKGLKEPKFDDLDQVEDFYSKATPSIVDKVLIGIYRCMAWTKEDQASIASQFPE*
DelMOWin2010_100235985	F025618	N/A	MSVAFDSNVNLTCEIAFDSNPLDSTQNWTDVSAYLRSFDTNRGRISNLSQFQTGTAVVTLDNRDNRFSPNQTTYYYDATNG